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Student Publications


Bryson, A.E., Lanier, E.R., Lau, K.H., Hamilton, J.P., Vaillancourt, B., Mathieu, D., Yocca, A.E., Miller, G.P., Edger, P.P., Buell, C.R., Hamberger, B. "Uncovering a miltiradiene biosynthetic gene cluster in the Lamiaceae reveals a dynamic evolutionary trajectory." Nature Communications (20 Jan. 2023). https://doi.org/10.1038/s41467-023-35845-1.

Jiang X., Walker B., He S.Y., Hu J. (2023) "The role of photorespiration in plant immunity." Front Plant Sci (1 Feb. 2023). https://doi.org/10.3389/fpls.2023.1125945.


Bird, K.A., M. Jacobs, A. Sebolt, K. Rhoades, E.I. Alger, M. Colle, M.L. Alekman, et al. "Parental Origins of the Cultivated Tetraploid Sour Cherry (Prunus Cerasus L.)." Plants, People, Planet 4, no. 5 (12 May 2022): 444-50. https://doi.org/https://doi.org/10.1002/ppp3.10267.

Bryson, A. E., E. R. Lanier, K. Lau, D. T. Mathieu, A. Yocca, G. P. Miller, P. Edger, C.R. Buell, and B. Hamberger. "Uncovering a Miltiradiene Biosynthetic Gene Cluster in the Lamiaceae Reveals a Dynamic Evolutionary Trajectory." Research Square  (18 April 2022). https://doi.org/https://doi.org/10.21203/rs.3.rs-1535494/v1.

Fiesel, P. D., H. M. Parks, R. L. Last, and C. S. Barry. "Fruity, Sticky, Stinky, Spicy, Bitter, Addictive, and Deadly: Evolutionary Signatures of Metabolic Complexity in the Solanaceae." Nat Prod Rep 39, no. 7 (Jul 20 2022): 1438-64. https://doi.org/10.1039/d2np00003b.

Kokarakis, E.J., R. Rillema, Ducat. D.C., and J.K. Sakkow. "Developing Cyanobacterial Quorum Sensing Toolkits: Towards Interspecies Coordination in Mixed Autotroph/Heterotroph Communities." bioRxiv  (21 July 2022 2022). https://doi.org/https://doi.org/10.1101/2022.07.20.500858.

Lucker, B.F., J.A. Temple, N.L. Panchy, U.F. Benning, J.D. Bibik, Neofotis. P.G., J.C. Weissman, et al. "Selection-Enriched Genomic Loci (Segl) Reveals Genetic Loci for Environmental Adaptation and Photosynthetic Productivity in Chlamydomonas Reinhardtii." Algal Research 64 (May 2022). https://doi.org/https://doi.org/10.1016/j.algal.2022.102709.

Parks, H.M., Cinelli, M.A., Bedewitz M.A., Grabar, J.M., Hurney, S.M., Walker K.D., Jones, A.D., Barry, C.S. "Redirecting tropane alkaloid metabolism reveals pyrrolidine alkaloid diversity in Atropa belladonna." New Phytologist (30 November 2022). https://doi.org/10.1111/nph.18651.

Young, D. Y., N. Pang, and Y. Shachar-Hill. "13c-Labeling Reveals How Membrane Lipid Components Contribute to Triacylglycerol Accumulation in Chlamydomonas." Plant Physiol 189, no. 3 (Jun 27 2022): 1326-44. https://doi.org/10.1093/plphys/kiac154.


Cusack, S. A., P. Wang, S. G. Lotreck, B. M. Moore, F. Meng, J. K. Conner, P. J. Krysan, M. D. Lehti-Shiu, and S. H. Shiu. "Predictive Models of Genetic Redundancy in Arabidopsis Thaliana." Mol Biol Evol 38, no. 8 (Jul 29 2021): 3397-414. https://doi.org/10.1093/molbev/msab111.

Gregory, L. M., A. M. McClain, D. M. Kramer, J. D. Pardo, K. E. Smith, O. L. Tessmer, B. J. Walker, L. G. Ziccardi, and T. D. Sharkey. "The Triose Phosphate Utilization Limitation of Photosynthetic Rate: Out of Global Models but Important for Leaf Models." Plant Cell Environ 44, no. 10 (Oct 2021): 3223-26. https://doi.org/10.1111/pce.14153.

Li, J., J. Peng, X. Jiang, A. C. Rea, J. Peng, and J. Hu. "Deeplearnmor: A Deep-Learning Framework for Fluorescence Image-Based Classification of Organelle Morphology." Plant Physiol 186, no. 4 (Aug 3 2021): 1786-99. https://doi.org/10.1093/plphys/kiab223.

Young, D. Y., and Y. Shachar-Hill. "Large Fluxes of Fatty Acids from Membranes to Triacylglycerol and Back During N-Deprivation and Recovery in Chlamydomonas." Plant Physiol 185, no. 3 (Apr 2 2021): 796-814. https://doi.org/10.1093/plphys/kiaa071.


Bryson, A. E., M. Wilson Brown, J. Mullins, W. Dong, K. Bahmani, N. Bornowski, C. Chiu, et al. "Composite Modeling of Leaf Shape Along Shoots Discriminates Vitis Species Better Than Individual Leaves." Appl Plant Sci 8, no. 12 (Dec 2020): e11404. https://doi.org/10.1002/aps3.11404.

Gomez-Cano, L., F. Gomez-Cano, F. M. Dillon, R. Alers-Velazquez, A. I. Doseff, E. Grotewold, and J. Gray. "Discovery of Modules Involved in the Biosynthesis and Regulation of Maize Phenolic Compounds." Plant Sci 291 (Feb 2020): 110364. https://doi.org/10.1016/j.plantsci.2019.110364.

Koenig, A. M., C. Benning, and S. Hoffmann-Benning. "Chapter 2 - Lipid Trafficking and Signaling in Plants." Lipid Signaling and Metabolism  (2020): 23-44. https://doi.org/https://doi.org/10.1016/B978-0-12-819404-1.00002-6.

Koenig, A. M., and S. Hoffmann-Benning. "The Interplay of Phloem-Mobile Signals in Plant Development and Stress Response." Biosci Rep 40, no. 10 (Oct 30 2020). https://doi.org/10.1042/BSR20193329.

Li, P., Y. J. Lu, H. Chen, and B. Day. "The Lifecycle of the Plant Immune System." CRC Crit Rev Plant Sci 39, no. 1 (2020): 72-100. https://doi.org/10.1080/07352689.2020.1757829.

Miller, G. P., W. W. Bhat, E. R. Lanier, S. R. Johnson, D. T. Mathieu, and B. Hamberger. "The Biosynthesis of the Anti-Microbial Diterpenoid Leubethanol in Leucophyllum Frutescens Proceeds Via an All-Cis Prenyl Intermediate." Plant J 104, no. 3 (Nov 2020): 693-705. https://doi.org/10.1111/tpj.14957.